Hnrnpa1l2-ps2 Pseudogene Detail

Summary

• Symbol
  Hnrnpa1l2-ps2
• Name
  heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2
• Synonyms
  Gm5803

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3645633
  NCBI Gene: 545091
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:22713954-22714916 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 8.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645633	pseudogene	Chr15:22713906-22715070 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  HNRNPA1L2, heterogeneous nuclear ribonucleoprotein A1 like 2

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  HNRNPA1L2, heterogeneous nuclear ribonucleoprotein A1 like 2
  
• Links
  HGNC:27067

  NCBI Gene ID: 144983

  neXtProt AC: NX_Q32P51

  UniProt: Q32P51

  
  
• Chr Location
  13q14.3; chr13:52617525-52643773 (+)  GRCh38

---

• MGI Vertebrate Homology
  Hnrnpa1l2-ps2 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: HNRNPA1L2
• Gene Tree
  Hnrnpa1l2-ps2
  

Human Diseases

• Diseases
  4 with human HNRNPA1 associations

				Human Disease	Mouse Models
				amyotrophic lateral sclerosis type 20 IDs amyotrophic lateral sclerosis type 20       DOID:0060211 OMIM:615426
				distal myopathy 3 IDs distal myopathy 3       DOID:0111189 OMIM:610099 ORDO:399086
				inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3 IDs inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3       DOID:0111386 OMIM:615424
				tropical spastic paraparesis IDs tropical spastic paraparesis       DOID:321 ICD10CM:G04.1 MESH:D015493 NCI:C179058 OMIM:159580 UMLS_CUI:C0030481

Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Hnrnpa1l2-ps2
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  2

• Ensembl
  ENSMUSG00000021927 (Evidence)
• NCBI Gene
  545091

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000021927	Ensembl Gene Model | MGI Sequence Detail	963	C57BL/6J
transcript	ENSMUST00000022493	Ensembl | MGI Sequence Detail	963	Not Applicable
polypeptide	NP_001159443	RefSeq | MGI Sequence Detail	320	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5896374

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Hnrnpa1l2-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr133810	Chr15:22714976-22714977 (-)	-61 bp