Gm8662 Pseudogene Detail

Summary

• Symbol
  Gm8662
• Name
  predicted gene 8662

• Feature Type
  pseudogene
• IDs
  MGI:3645694
  NCBI Gene: 667487
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:157031793-157032366 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 73.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645694	pseudogene	ChrX:157031778-157032383 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014967	pseudogene	ChrX:156151363-156151936 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0014899	pseudogene	ChrX:160357541-160358114 (+)
BALB/cJ	MGP_BALBcJ_G0014912	pseudogene	ChrX:153521085-153521658 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0015398	pseudogene	ChrX:160775692-160776265 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012724	pseudogene	Chr5:93221094-93221673 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0014819	pseudogene	ChrX:154428914-154429487 (+)
FVB/NJ	MGP_FVBNJ_G0014802	pseudogene	ChrX:153534845-153535418 (+)
LP/J	MGP_LPJ_G0014920	pseudogene	ChrX:157290809-157291382 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014846	pseudogene	ChrX:174022252-174022825 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015382	pseudogene	ChrX:155695002-155695899 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm8662
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000081797 (Evidence)
• NCBI Gene
  667487

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081797	Ensembl Gene Model | MGI Sequence Detail	574	C57BL/6J
transcript	ENSMUST00000118644	Ensembl | MGI Sequence Detail	574	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm8662:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162459	ChrX:157031769-157031770 (+)	-23 bp