Igkv14-130 Gene Detail

Summary

• Symbol
  Igkv14-130
• Name
  immunoglobulin kappa variable 14-130

• Feature Type
  gene segment
• IDs
  MGI:3645770
  NCBI Gene: 628072
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:67768030-67768495 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 30.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645770	gene segment	Chr6:67768030-67768495 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000112	gene segment	Chr6:67900941-67901406 (+)
A/J	MGP_AJ_G0000104	gene segment	Chr6:64955699-64956164 (+)
AKR/J	MGP_AKRJ_G0000111	gene segment	Chr6:66979403-66979868 (+)
BALB/cJ	MGP_BALBcJ_G0000098	gene segment	Chr6:65341278-65341743 (+)
C3H/HeJ	MGP_C3HHeJ_G0000152	gene segment	Chr6:117199513-117199978 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0000151	gene segment	Chr6:69453501-69453966 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000066	gene segment	Chr6:64801449-64801912 (+)
CAST/EiJ	MGP_CASTEiJ_G0000113	gene segment	Chr6:67197801-67198266 (+)
CBA/J	MGP_CBAJ_G0000105	gene segment	Chr6:72298229-72298694 (+)
DBA/2J	MGP_DBA2J_G0000101	gene segment	Chr6:64642487-64642952 (+)
FVB/NJ	MGP_FVBNJ_G0000099	gene segment	Chr6:64089605-64090070 (+)
LP/J	MGP_LPJ_G0000117	gene segment	Chr6:67778727-67779192 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000114	gene segment	Chr6:76067421-76067886 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000135	gene segment	Chr6:66980055-66980520 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0000074	gene segment	Chr6:66390507-66390972 (+)
WSB/EiJ	MGP_WSBEiJ_G0000111	gene segment	Chr6:67203067-67203517 (+)

Homology

• MGI Vertebrate Homology
  Igkv14-130 stringent orthology
  1 mouse;1 zebrafish
  
• Gene Tree
  Igkv14-130
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000096461 (Evidence)
• NCBI Gene
  628072

Representative Sequences			Length	Strain/Species
genomic	628072	NCBI Gene Model | MGI Sequence Detail	466	C57BL/6J
polypeptide	A0A0G2JF45	UniProt | EBI | MGI Sequence Detail	117	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR003599 Immunoglobulin subtype
  IPR050150 Immunoglobulin Variable Light Chain
  IPR013106 Immunoglobulin V-set domain

References

• Summaries
  All 6
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Igkv14-130:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56910	Chr6:67768007-67768011 (+)	-21 bp