Gm4754 Pseudogene Detail

Summary

• Symbol
  Gm4754
• Name
  predicted gene 4754

• Feature Type
  pseudogene
• IDs
  MGI:3645925
  NCBI Gene: 208522
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:41499466-41500274 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 22.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3645925	pseudogene	Chr5:41499445-41500346 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013064	pseudogene	Chr5:39926732-39927540 (+)
A/J	MGP_AJ_G0013049	pseudogene	Chr5:38581989-38583854 (+)
AKR/J	MGP_AKRJ_G0013015	pseudogene	Chr5:39968766-39969574 (+)
BALB/cJ	MGP_BALBcJ_G0013028	pseudogene	Chr5:39024939-39025747 (+)
C3H/HeJ	MGP_C3HHeJ_G0012879	pseudogene	Chr5:39953593-39954401 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013387	pseudogene	Chr5:41932443-41933251 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012846	pseudogene	Chr5:42984574-42987005 (+)
DBA/2J	MGP_DBA2J_G0012924	pseudogene	Chr5:38656722-38657592 (+)
FVB/NJ	MGP_FVBNJ_G0012930	pseudogene	Chr5:38090774-38092051 (+)
LP/J	MGP_LPJ_G0012998	pseudogene	Chr5:40361227-40362035 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012948	pseudogene	Chr5:43805910-43806888 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013389	pseudogene	Chr5:39482871-39483604 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4754
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm4754
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000106895 (Evidence)
• NCBI Gene
  208522

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106895	Ensembl Gene Model | MGI Sequence Detail	809	C57BL/6J
transcript	ENSMUST00000201337	Ensembl | MGI Sequence Detail	809	Not Applicable

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105

TSS for Gm4754:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr46069	Chr5:41499439-41499441 (+)	-26 bp