Spata31d1b Gene Detail

Summary

• Symbol
  Spata31d1b
• Name
  spermatogenesis associated 31 subfamily D, member 1B
• Synonyms
  Fam75d1b, Gm4934

• Feature Type
  protein coding gene
• IDs
  MGI:3646080
  NCBI Gene: 238662
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:59860098-59867103 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 31.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  245 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646080	protein coding gene	Chr13:59860098-59867109 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0020641	protein coding gene	Chr13:59423462-59431559 (+)
A/J	MGP_AJ_G0020596	protein coding gene	Chr13:57205697-57213983 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0020592	protein coding gene	Chr13:57468611-57475482 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0021026	protein coding gene	Chr13:61218509-61228941 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018608	protein coding gene	Chr13:55092731-55099835 (+)
CAST/EiJ	MGP_CASTEiJ_G0019907	protein coding gene	Chr13:58919901-58926486 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0020473	protein coding gene	Chr13:56748679-56757482 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0020549	protein coding gene	Chr13:59685389-59693737 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0021069	protein coding gene	Chr13:58525648-58531921 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0019967	protein coding gene	Chr13:58969493-58976009 (+)

Homology

• Human Ortholog
  SPATA31D1, SPATA31 subfamily D member 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SPATA31D1, SPATA31 subfamily D member 1
  
• Synonyms
  FAM75D1
• Links
  HGNC:37283

  NCBI Gene ID: 389763

  neXtProt AC: NX_Q6ZQQ2

  UniProt: Q6ZQQ2

  
  
• Chr Location
  9q21.32; chr9:81987405-81995253 (+)  GRCh38

---

• MGI Vertebrate Homology
  Spata31d1b stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SPATA31D1
• Gene Tree
  Spata31d1b
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Spata31d1b
• Incidental Mutations
  APF , CvDC
• Find Mice (IMSR)
  38 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS49285.1

• Ensembl
  ENSMUSG00000091311 (Evidence)
• NCBI Gene
  238662

Representative Sequences			Length	Strain/Species
genomic	238662	NCBI Gene Model | MGI Sequence Detail	7006	C57BL/6J
transcript	NM_001167593	RefSeq | MGI Sequence Detail	4281	C57BL/6
polypeptide	NP_001161065	RefSeq | MGI Sequence Detail	1361	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR039509 SPATA31

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 16

  Phenotypes 5
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Spata31d1b:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr4094	Chr13:59860096-59860099 (+)	0 bp