Rpl12-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl12-ps1
• Name
  ribosomal protein L12, pseudogene 1
• Synonyms
  Gm4957

• Feature Type
  pseudogene
• IDs
  MGI:3646154
  NCBI Gene: 241053
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:36997011-36997508 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 15.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  4

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646154	pseudogene	Chr1:36996967-36997597 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010072	pseudogene	Chr1:35891886-35893008 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009965	pseudogene	Chr1:40299735-40300307 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010280	pseudogene	Chr1:35098360-35109968 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl12-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl12-ps1
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  1

• Ensembl
  ENSMUSG00000080054 (Evidence)
• NCBI Gene
  241053

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080054	Ensembl Gene Model | MGI Sequence Detail	498	C57BL/6J
transcript	ENSMUST00000116168	Ensembl | MGI Sequence Detail	498	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Rpl12-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11291	Chr1:36997598-36997600 (-)	-91 bp