Gm16373 Pseudogene Detail

Summary

• Symbol
  Gm16373
• Name
  predicted pseudogene 16373

• Feature Type
  pseudogene
• IDs
  MGI:3646158
  NCBI Gene: 100039300
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:115796578-115796880 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 49.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646158	pseudogene	ChrX:115796569-115797064 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014763	pseudogene	ChrX:113689754-113690056 (+)
A/J	MGP_AJ_G0014768	pseudogene	ChrX:113429953-113430255 (+)
AKR/J	MGP_AKRJ_G0014701	pseudogene	ChrX:117044476-117044778 (+)
BALB/cJ	MGP_BALBcJ_G0014719	pseudogene	ChrX:111930366-111930668 (+)
C3H/HeJ	MGP_C3HHeJ_G0014550	pseudogene	ChrX:114066108-114066410 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015202	pseudogene	ChrX:117028486-117028788 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012866	pseudogene	ChrX:109772368-109772671 (+)
CAST/EiJ	MGP_CASTEiJ_G0014169	pseudogene	ChrX:97836223-97836525 (+)
CBA/J	MGP_CBAJ_G0014543	pseudogene	ChrX:120751817-120752119 (+)
DBA/2J	MGP_DBA2J_G0014627	pseudogene	ChrX:112679485-112679787 (+)
FVB/NJ	MGP_FVBNJ_G0014606	pseudogene	ChrX:112079280-112079582 (+)
LP/J	MGP_LPJ_G0014719	pseudogene	ChrX:114620348-114620650 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014654	pseudogene	ChrX:126556437-126556739 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015173	pseudogene	ChrX:113216299-113216601 (+)
PWK/PhJ	MGP_PWKPhJ_G0013972	pseudogene	ChrX:95189966-95190268 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013765	pseudogene	ChrX:98582942-98583244 (+)
WSB/EiJ	MGP_WSBEiJ_G0014250	pseudogene	ChrX:111913646-111913948 (+)

Homology

• Gene Tree
  Gm16373
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000043295 (Evidence)
• NCBI Gene
  100039300

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000043295	Ensembl Gene Model | MGI Sequence Detail	303	C57BL/6J
transcript	ENSMUST00000129517	Ensembl | MGI Sequence Detail	303	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;