Gm9385 Pseudogene Detail

Summary

• Symbol
  Gm9385
• Name
  predicted pseudogene 9385

• Feature Type
  pseudogene
• IDs
  MGI:3646182
  NCBI Gene: 668829
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:115869661-115870132 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 68.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646182	pseudogene	Chr9:115869661-115870132 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012934	pseudogene	Chr4:151782875-151783344 (-)
A/J	MGP_AJ_G0014046	pseudogene	Chr7:140730936-140731407 (+)
AKR/J	MGP_AKRJ_G0013981	pseudogene	Chr7:144553625-144554096 (+)
BALB/cJ	MGP_BALBcJ_G0014004	pseudogene	Chr7:140468309-140468784 (+)
C3H/HeJ	MGP_C3HHeJ_G0013838	pseudogene	Chr7:144356197-144358187 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014437	pseudogene	Chr7:150180121-150180592 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012292	pseudogene	Chr7:141854686-141855156 (+)
CAST/EiJ	MGP_CASTEiJ_G0013495	pseudogene	Chr7:136654765-136655341 (+)
CBA/J	MGP_CBAJ_G0013819	pseudogene	Chr7:155247861-155248332 (+)
DBA/2J	MGP_DBA2J_G0013896	pseudogene	Chr7:138684665-138685136 (+)
FVB/NJ	MGP_FVBNJ_G0013896	pseudogene	Chr7:138567294-138567765 (+)
LP/J	MGP_LPJ_G0013978	pseudogene	Chr7:146382407-146382878 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012816	pseudogene	Chr4:165212772-165213231 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014406	pseudogene	Chr7:143556263-143556734 (+)
PWK/PhJ	MGP_PWKPhJ_G0013310	pseudogene	Chr7:131870517-131870988 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013081	pseudogene	Chr7:130371672-130372143 (+)
WSB/EiJ	MGP_WSBEiJ_G0013554	pseudogene	Chr7:144455734-144456205 (+)

Homology

• Gene Tree
  Gm9385
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000080848 (Evidence)
• NCBI Gene
  668829

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080848	Ensembl Gene Model | MGI Sequence Detail	472	C57BL/6J
transcript	ENSMUST00000117563	Ensembl | MGI Sequence Detail	472	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9385:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91912	Chr9:115870133-115870167 (-)	-18 bp