Cyp4f17 Gene Detail

Summary

• Symbol
  Cyp4f17
• Name
  cytochrome P450, family 4, subfamily f, polypeptide 17
• Synonyms
  EG208285

• Feature Type
  protein coding gene
• IDs
  MGI:3646233
  NCBI Gene: 208285
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr17:32725404-32749132 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 17.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  750 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646233	protein coding gene	Chr17:32725024-32749132 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0023507	protein coding gene	Chr17:32349656-32377868 (+)
A/J	MGP_AJ_G0023464	protein coding gene	Chr17:31273014-31295821 (+)
AKR/J	MGP_AKRJ_G0023430	protein coding gene	Chr17:31557764-31579612 (+)
BALB/cJ	MGP_BALBcJ_G0023469	protein coding gene	Chr17:31374053-31395260 (+)
C3H/HeJ	MGP_C3HHeJ_G0023231	protein coding gene	Chr17:31958311-31981945 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0023912	protein coding gene	Chr17:33435812-33497312 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021386	protein coding gene	Chr17:28374779-28396390 (+)
CAST/EiJ	MGP_CASTEiJ_G0022732	protein coding gene	Chr17:32018028-32041667 (+)
CBA/J	MGP_CBAJ_G0023206	protein coding gene	Chr17:34906421-34932987 (+)
DBA/2J	MGP_DBA2J_G0023336	protein coding gene	Chr17:30656844-30679604 (+)
FVB/NJ	MGP_FVBNJ_G0023306	protein coding gene	Chr17:30480670-30502806 (+)
LP/J	MGP_LPJ_G0023414	protein coding gene	Chr17:32565604-32590167 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023324	protein coding gene	Chr17:33975949-34001941 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023954	protein coding gene	Chr17:31930233-31956553 (+)
PWK/PhJ	MGP_PWKPhJ_G0022481	protein coding gene	Chr17:29550712-29575094 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0022300	protein coding gene	Chr17:29941445-29968077 (+)
WSB/EiJ	MGP_WSBEiJ_G0022794	protein coding gene	Chr17:31917159-31946453 (+)

Homology

• MGI Vertebrate Homology
  Cyp4f17 stringent orthology
  1 mouse;1 rat;1 zebrafish
  
• Gene Tree
  Cyp4f17
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  1
• Targeted
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  25 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  19
• UniProt
  2
• CCDS
  CCDS50059.1

• Ensembl
  ENSMUSG00000091586 (Evidence)
• NCBI Gene
  208285

Representative Sequences			Length	Strain/Species
genomic	208285	NCBI Gene Model | MGI Sequence Detail	23729	C57BL/6J
transcript	NR_177062	RefSeq | MGI Sequence Detail	2973	C57BL/6
polypeptide	NP_001094915	RefSeq | MGI Sequence Detail	524	C57BL/6

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR001128 Cytochrome P450
  IPR017972 Cytochrome P450, conserved site
  IPR002403 Cytochrome P450, E-class, group IV
  IPR050196 Cytochrome P450 Monooxygenases
  IPR036396 Cytochrome P450 superfamily

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157065 Helmholtz Zentrum Muenchen GmbH, Alleles produced for the EUCOMM and EUCOMMTools projects by the Helmholtz Zentrum Muenchen GmbH (Hmgu). MGI Direct Data Submission. 2010-2015;

TSS for Cyp4f17:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143717	Chr17:32725393-32725414 (+)	0 bp
Tssr143718	Chr17:32725420-32725447 (+)	30 bp
Tssr143719	Chr17:32725448-32725475 (+)	58 bp
Tssr143720	Chr17:32740705-32740709 (+)	15,303 bp