Gm6599 Pseudogene Detail

Summary

• Symbol
  Gm6599
• Name
  predicted gene 6599

• Feature Type
  pseudogene
• IDs
  MGI:3646311
  NCBI Gene: 625548
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr16:95555500-95555907 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 56.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646311	pseudogene	Chr16:95555490-95555945 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6599
  

Human Diseases

• References
  4 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  62 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm6599
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  4

• Ensembl
  ENSMUSG00000117167 (Evidence)
• NCBI Gene
  625548

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117167	Ensembl Gene Model | MGI Sequence Detail	408	C57BL/6J
transcript	ENSMUST00000233819	Ensembl | MGI Sequence Detail	408	Not Applicable

References

• Summaries
  All 66

  Diseases 4

  Phenotypes 62
• Earliest
  J:42265 Huang TT, et al., Superoxide-mediated cytotoxicity in superoxide dismutase-deficient fetal fibroblasts. Arch Biochem Biophys. 1997 Aug 15;344(2):424-32
• Latest
  J:333961 Feng D, et al., Chromatin organizer SATB1 controls the cell identity of CD4(+) CD8(+) double-positive thymocytes by regulating the activity of super-enhancers. Nat Commun. 2022 Sep 22;13(1):5554