Gm5276 Pseudogene Detail

Summary

• Symbol
  Gm5276
• Name
  predicted gene 5276

• Feature Type
  pseudogene
• IDs
  MGI:3646382
  NCBI Gene: 383862
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:57269809-57270855 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 27.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  220 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646382	pseudogene	Chr3:57269670-57271035 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012157	pseudogene	Chr3:56150815-56151861 (+)
A/J	MGP_AJ_G0012151	pseudogene	Chr3:54399847-54400865 (+)
AKR/J	MGP_AKRJ_G0012116	pseudogene	Chr3:55532989-55534035 (+)
BALB/cJ	MGP_BALBcJ_G0012130	pseudogene	Chr3:54238902-54239948 (+)
C3H/HeJ	MGP_C3HHeJ_G0012006	pseudogene	Chr3:55725355-55726401 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012440	pseudogene	Chr3:58231965-58233011 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011981	pseudogene	Chr3:60145315-60146361 (+)
DBA/2J	MGP_DBA2J_G0012036	pseudogene	Chr3:53908840-53909858 (+)
FVB/NJ	MGP_FVBNJ_G0012040	pseudogene	Chr3:52887478-52888496 (+)
LP/J	MGP_LPJ_G0012104	pseudogene	Chr3:56884534-56885580 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012043	pseudogene	Chr3:64253734-64254780 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012448	pseudogene	Chr3:55465891-55466937 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011815	pseudogene	Chr3:55556649-55557667 (+)

Homology

• Gene Tree
  Gm5276
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm5276
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000105452 (Evidence)
• NCBI Gene
  383862

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105452	Ensembl Gene Model | MGI Sequence Detail	1047	C57BL/6J
transcript	ENSMUST00000196683	Ensembl | MGI Sequence Detail	1047	Not Applicable

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm5276:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29182	Chr3:57269662-57269673 (+)	-141 bp