Defb44-ps Pseudogene Detail

Summary

• Symbol
  Defb44-ps
• Name
  defensin beta 44, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:3646526
  NCBI Gene: 654454
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:18280277-18293788 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 5.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  662 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646526	pseudogene	Chr1:18280277-18293798 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039877	pseudogene	Chr1:15799041-15811195 (-)
A/J	MGP_AJ_G0039883	pseudogene	Chr1:15585367-15598841 (-)
AKR/J	MGP_AKRJ_G0039806	pseudogene	Chr1:15569051-15582105 (-)
BALB/cJ	MGP_BALBcJ_G0039863	pseudogene	Chr1:15270999-15284624 (-)
C3H/HeJ	MGP_C3HHeJ_G0039507	pseudogene	Chr1:15641452-15664026 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040427	pseudogene	Chr1:16486193-16498839 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037018	pseudogene	Chr1:13997084-14016861 (-)
CAST/EiJ	MGP_CASTEiJ_G0038628	pseudogene	Chr1:15720445-15736800 (-)
CBA/J	MGP_CBAJ_G0039472	pseudogene	Chr1:16840531-16854907 (-)
DBA/2J	MGP_DBA2J_G0039679	pseudogene	Chr1:15161296-15173015 (-)
FVB/NJ	MGP_FVBNJ_G0039639	pseudogene	Chr1:14937715-14951224 (-)
LP/J	MGP_LPJ_G0039714	pseudogene	Chr1:15993445-16007064 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039632	pseudogene	Chr1:17682349-17693756 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040524	pseudogene	Chr1:15540728-15554180 (-)
PWK/PhJ	MGP_PWKPhJ_G0038308	pseudogene	Chr1:14911635-14924487 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038043	pseudogene	Chr1:15672534-15685774 (-)
WSB/EiJ	MGP_WSBEiJ_G0038842	pseudogene	Chr1:15532414-15543478 (-)

Homology

• Gene Tree
  Defb44-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000070977 (Evidence)
• NCBI Gene
  654454

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000070977	Ensembl Gene Model | MGI Sequence Detail	13512	C57BL/6J
transcript	ENSMUST00000126871	Ensembl | MGI Sequence Detail	219	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Defb44-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr11067	Chr1:18293827-18293832 (-)	-42 bp
Tssr11066	Chr1:18293794-18293806 (-)	-12 bp