Gm5973 Pseudogene Detail

Summary

• Symbol
  Gm5973
• Name
  predicted gene 5973

• Feature Type
  pseudogene
• IDs
  MGI:3646541
  NCBI Gene: 546733
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:40902897-40903392 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 20.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  175 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646541	pseudogene	Chr1:40902699-40903399 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010088	pseudogene	Chr1:39683245-39683740 (-)
A/J	MGP_AJ_G0010075	pseudogene	Chr1:38558176-38558671 (-)
AKR/J	MGP_AKRJ_G0010054	pseudogene	Chr1:39030943-39031438 (-)
BALB/cJ	MGP_BALBcJ_G0010062	pseudogene	Chr1:38206486-38206981 (-)
C3H/HeJ	MGP_C3HHeJ_G0009994	pseudogene	Chr1:39353352-39353847 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010311	pseudogene	Chr1:41346149-41346644 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009075	pseudogene	Chr1:35463285-35463781 (-)
CAST/EiJ	MGP_CASTEiJ_G0009829	pseudogene	Chr1:39242643-39243138 (-)
CBA/J	MGP_CBAJ_G0009964	pseudogene	Chr1:42552180-42552675 (-)
DBA/2J	MGP_DBA2J_G0009988	pseudogene	Chr1:37835282-37835777 (-)
FVB/NJ	MGP_FVBNJ_G0010015	pseudogene	Chr1:37371761-37372256 (-)
LP/J	MGP_LPJ_G0010079	pseudogene	Chr1:40030310-40030805 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009972	pseudogene	Chr1:44534551-44535046 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010289	pseudogene	Chr1:39199389-39199884 (-)
PWK/PhJ	MGP_PWKPhJ_G0009738	pseudogene	Chr1:37653263-37653758 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009552	pseudogene	Chr1:39170083-39170578 (-)
WSB/EiJ	MGP_WSBEiJ_G0009893	pseudogene	Chr1:39170722-39171217 (-)

Homology

• Gene Tree
  Gm5973
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5973
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000094136 (Evidence)
• NCBI Gene
  546733

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094136	Ensembl Gene Model | MGI Sequence Detail	496	C57BL/6J
transcript	ENSMUST00000178542	Ensembl | MGI Sequence Detail	496	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;