Rpl23a-ps11 Pseudogene Detail

Summary

• Symbol
  Rpl23a-ps11
• Name
  ribosomal protein L23A, pseudogene 11
• Synonyms
  Gm6672

• Feature Type
  pseudogene
• IDs
  MGI:3646618
  NCBI Gene: 626373
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:32087906-32088368 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  49 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646618	pseudogene	Chr7:32087892-32088419 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0013812	pseudogene	Chr7:32581864-32582316 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0013668	pseudogene	Chr7:33554467-33554919 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013721	pseudogene	Chr7:31716141-31716593 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013745	pseudogene	Chr7:34435574-34436026 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014220	pseudogene	Chr7:30651513-30652312 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl23a-ps11
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000100513 (Evidence)
• NCBI Gene
  626373

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100513	Ensembl Gene Model | MGI Sequence Detail	463	C57BL/6J
transcript	ENSMUST00000191583	Ensembl | MGI Sequence Detail	463	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;