Gm16416 Pseudogene Detail

Summary

• Symbol
  Gm16416
• Name
  predicted gene 16416

• Feature Type
  pseudogene
• IDs
  MGI:3646635
  NCBI Gene: 432801
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:103533617-103534099 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 56.16 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646635	pseudogene	Chr13:103533578-103534132 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011060	pseudogene	Chr13:105479385-105482475 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0011014	pseudogene	Chr13:104441499-104441914 (+)
BALB/cJ	MGP_BALBcJ_G0011033	pseudogene	Chr13:102080531-102081232 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010904	pseudogene	Chr13:112900550-112901032 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0010962	pseudogene	Chr13:99841647-99842102 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0010946	pseudogene	Chr13:113049620-113050041 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0010804	pseudogene	Chr13:104395634-104396116 (+)

Homology

• Gene Tree
  Gm16416
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000095940 (Evidence)
• NCBI Gene
  432801

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095940	Ensembl Gene Model | MGI Sequence Detail	483	C57BL/6J
transcript	ENSMUST00000179660	Ensembl | MGI Sequence Detail	483	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm16416:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120902	Chr13:103533575-103533577 (+)	-41 bp