Rpl13-ps3 Pseudogene Detail

Summary

• Symbol
  Rpl13-ps3
• Name
  ribosomal protein L13, pseudogene 3
• Synonyms
  Gm9026

• Feature Type
  pseudogene
• IDs
  MGI:3646682
  NCBI Gene: 668182
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:59130955-59131578 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 31.22 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646682	pseudogene	Chr14:59130916-59131616 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0033263	protein coding gene	Chr7:148026426-148027272 (-)
A/J	MGP_AJ_G0033246	protein coding gene	Chr7:143750078-143750903 (-)
AKR/J	MGP_AKRJ_G0024902	protein coding gene	Chr19:12646121-12647914 (-)
BALB/cJ	MGP_BALBcJ_G0024931	protein coding gene	Chr19:12137401-12140111 (-)
C3H/HeJ	MGP_C3HHeJ_G0032962	protein coding gene	Chr7:147544457-147545275 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0032813	protein coding gene	Chr8:75948283-75948983 (-)
CBA/J	MGP_CBAJ_G0032933	protein coding gene	Chr7:158633448-158634464 (-)
DBA/2J	MGP_DBA2J_G0033087	protein coding gene	Chr7:141699686-141700500 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0024883	protein coding gene	Chr19:12873314-12874391 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0024787	protein coding gene	Chr19:13739392-13740093 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0033776	protein coding gene	Chr7:146743204-146745431 (-)
PWK/PhJ	MGP_PWKPhJ_G0031993	protein coding gene	Chr7:135032158-135032644 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0031839	protein coding gene	Chr7:133534112-133534988 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl13-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl13-ps3
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000059835 (Evidence)
• NCBI Gene
  668182

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000059835	Ensembl Gene Model | MGI Sequence Detail	624	C57BL/6J
transcript	ENSMUST00000079960	Ensembl | MGI Sequence Detail	624	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rpl13-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125896	Chr14:59130914-59130918 (+)	-39 bp