Gm6884 Pseudogene Detail

Summary

• Symbol
  Gm6884
• Name
  predicted gene 6884

• Feature Type
  pseudogene
• IDs
  MGI:3646729
  NCBI Gene: 628480
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:23921490-23922104 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 11.41 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  223 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646729	pseudogene	Chr10:23921446-23922164 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010500	pseudogene	Chr10:21988071-21988685 (+)
A/J	MGP_AJ_G0010491	pseudogene	Chr10:21340550-21341164 (+)
AKR/J	MGP_AKRJ_G0010457	pseudogene	Chr10:21694435-21695049 (+)
BALB/cJ	MGP_BALBcJ_G0010467	pseudogene	Chr10:21430329-21430943 (+)
C3H/HeJ	MGP_C3HHeJ_G0010395	pseudogene	Chr10:21906152-21906766 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010738	pseudogene	Chr10:22671227-22671841 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009407	pseudogene	Chr10:20066316-20066924 (+)
CAST/EiJ	MGP_CASTEiJ_G0010213	pseudogene	Chr10:21797778-21798414 (+)
CBA/J	MGP_CBAJ_G0010361	pseudogene	Chr10:23658642-23659256 (+)
DBA/2J	MGP_DBA2J_G0010394	pseudogene	Chr10:21084281-21084895 (+)
FVB/NJ	MGP_FVBNJ_G0010415	pseudogene	Chr10:20799954-20800568 (+)
LP/J	MGP_LPJ_G0010483	pseudogene	Chr10:21978783-21979397 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010383	pseudogene	Chr10:23792107-23792721 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010707	pseudogene	Chr10:21566236-21566850 (+)
PWK/PhJ	MGP_PWKPhJ_G0010114	pseudogene	Chr10:20839088-20839702 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009928	pseudogene	Chr10:21370034-21370656 (+)
WSB/EiJ	MGP_WSBEiJ_G0010284	pseudogene	Chr10:21658351-21658965 (+)

Homology

• Gene Tree
  Gm6884
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm6884
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082960 (Evidence)
• NCBI Gene
  628480

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082960	Ensembl Gene Model | MGI Sequence Detail	615	C57BL/6J
transcript	ENSMUST00000119318	Ensembl | MGI Sequence Detail	615	Not Applicable

References

• Summaries
  All 15

  Phenotypes 11
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:322210 Fei A, et al., Coordination of two enhancers drives expression of olfactory trace amine-associated receptors. Nat Commun. 2021 Jun 18;12(1):3798