Gal3st2c Gene Detail

Summary

• Symbol
  Gal3st2c
• Name
  galactose-3-O-sulfotransferase 2C
• Synonyms
  Gm6086

• Feature Type
  protein coding gene
• IDs
  MGI:3646771
  NCBI Gene: 619597
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:93918227-93939261 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 47.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  725 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646771	protein coding gene	Chr1:93918227-93944869 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0016334	protein coding gene	Chr1:92254665-92280439 (+)
AKR/J	MGP_AKRJ_G0016296	protein coding gene	Chr1:94955035-94998879 (+)
BALB/cJ	MGP_BALBcJ_G0016289	protein coding gene	Chr1:92260940-92487980 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0014467	protein coding gene	Chr1:86462891-86490292 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0016270	protein coding gene	Chr1:96753627-96809998 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016221	protein coding gene	Chr1:105584218-105640744 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016789	protein coding gene	Chr1:94964775-94999314 (+)
PWK/PhJ	MGP_PWKPhJ_G0015486	protein coding gene	Chr1:90717558-90802531 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015272	protein coding gene	Chr1:93869917-93900412 (+)
WSB/EiJ	MGP_WSBEiJ_G0015761	protein coding gene	Chr1:94645919-94831682 (+)

Homology

• Human Ortholog
  GAL3ST2, galactose-3-O-sulfotransferase 2

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  GAL3ST2, galactose-3-O-sulfotransferase 2
  
• Synonyms
  GAL3ST-2, GP3ST
• Links
  HGNC:24869

  NCBI Gene ID: 64090

  neXtProt AC: NX_Q9H3Q3

  UniProt: Q9H3Q3

  
  
• Chr Location
  2q37.3; chr2:241776822-241804287 (+)  GRCh38

---

• MGI Vertebrate Homology
  Gal3st2c stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: GAL3ST2
• Gene Tree
  Gal3st2c
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gal3st2c
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  16 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  3
• GO References
  2

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  4
• UniProt
  1
• CCDS
  CCDS48330.1

• Ensembl
  ENSMUSG00000073608 (Evidence)
• NCBI Gene
  619597

Representative Sequences			Length	Strain/Species
genomic	619597	NCBI Gene Model | MGI Sequence Detail	21035	C57BL/6J
transcript	NM_001039219	RefSeq | MGI Sequence Detail	4063	C57BL/6
polypeptide	NP_001034308	RefSeq | MGI Sequence Detail	396	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR009729 Galactose-3-O-sulfotransferase
  IPR027417 P-loop containing nucleoside triphosphate hydrolase

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:5896368

References

• Summaries
  All 15

  Gene Ontology 2

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gal3st2c:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8208	Chr1:93923978-93924002 (+)	5,763 bp