Gm6563 Pseudogene Detail

Summary

• Symbol
  Gm6563
• Name
  predicted pseudogene 6563

• Feature Type
  pseudogene
• IDs
  MGI:3646907
  NCBI Gene: 625193
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:23653212-23653844 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 18.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  6

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646907	pseudogene	Chr19:23653175-23654099 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024987	protein coding gene	Chr19:21846697-21849051 (+)
A/J	MGP_AJ_G0024964	protein coding gene	Chr19:20652901-20653700 (+)
AKR/J	MGP_AKRJ_G0024934	protein coding gene	Chr19:21450664-21451388 (+)
BALB/cJ	MGP_BALBcJ_G0024963	protein coding gene	Chr19:20692977-20693719 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0024189	protein coding gene	Chr19:21131075-21132670 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6563
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Incidental Mutations
  APF
• Find Mice (IMSR)
  10 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas
• Other Vertebrate Links
  GEISHA SARNP

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000051255 (Evidence)
• NCBI Gene
  625193

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000051255	Ensembl Gene Model | MGI Sequence Detail	633	C57BL/6J
transcript	ENSMUST00000056396	Ensembl | MGI Sequence Detail	633	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81

TSS for Gm6563:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155592	Chr19:23653203-23653227 (+)	3 bp