Gm5455 Pseudogene Detail

Summary

• Symbol
  Gm5455
• Name
  predicted pseudogene 5455

• Feature Type
  pseudogene
• IDs
  MGI:3646920
  NCBI Gene: 432803
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:110441311-110442025 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 61.76 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  191 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646920	pseudogene	Chr13:110440304-110442133 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011060	pseudogene	Chr13:108257584-108258436 (-)
AKR/J	MGP_AKRJ_G0011017	pseudogene	Chr13:111522067-111522795 (-)
BALB/cJ	MGP_BALBcJ_G0011036	pseudogene	Chr13:108960880-108961608 (-)
C3H/HeJ	MGP_C3HHeJ_G0011253	pseudogene	Chr17:80101987-80105019 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011233	pseudogene	Chr17:86937085-86939024 (-)
DBA/2J	MGP_DBA2J_G0010952	pseudogene	Chr13:107973153-107975629 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5455
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000045609 (Evidence)
• NCBI Gene
  432803

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045609	Ensembl Gene Model | MGI Sequence Detail	715	C57BL/6J
transcript	ENSMUST00000058710	Ensembl | MGI Sequence Detail	715	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;