Gm4842 Pseudogene Detail

Summary

• Symbol
  Gm4842
• Name
  predicted pseudogene 4842

• Feature Type
  pseudogene
• IDs
  MGI:3647064
  NCBI Gene: 225681
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr18:69389713-69390198 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 43.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647064	pseudogene	Chr18:69389359-69390198 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011452	pseudogene	Chr18:69668624-69669458 (+)
A/J	MGP_AJ_G0011454	pseudogene	Chr18:66633497-66634331 (+)
AKR/J	MGP_AKRJ_G0011418	pseudogene	Chr18:68567642-68568476 (+)
BALB/cJ	MGP_BALBcJ_G0011434	pseudogene	Chr18:66783032-66783866 (+)
C3H/HeJ	MGP_C3HHeJ_G0011317	pseudogene	Chr18:68691805-68692639 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011722	pseudogene	Chr18:71490732-71491566 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010273	pseudogene	Chr18:65960184-65961025 (+)
CAST/EiJ	MGP_CASTEiJ_G0011121	pseudogene	Chr18:68774345-68775179 (+)
CBA/J	MGP_CBAJ_G0011292	pseudogene	Chr18:73928877-73929711 (+)
DBA/2J	MGP_DBA2J_G0011346	pseudogene	Chr18:66241400-66242234 (+)
FVB/NJ	MGP_FVBNJ_G0011352	pseudogene	Chr18:65619807-65620641 (+)
LP/J	MGP_LPJ_G0011415	pseudogene	Chr18:69526853-69527687 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011346	pseudogene	Chr18:75177391-75178225 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011707	pseudogene	Chr18:68746865-68747699 (+)
PWK/PhJ	MGP_PWKPhJ_G0010982	pseudogene	Chr18:66582389-66583223 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010804	pseudogene	Chr18:68893759-68894593 (+)
WSB/EiJ	MGP_WSBEiJ_G0011151	pseudogene	Chr18:68682969-68683803 (+)

Homology

• Gene Tree
  Gm4842
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000098060 (Evidence)
• NCBI Gene
  225681

Representative Sequences			Length	Strain/Species
genomic	225681	NCBI Gene Model | MGI Sequence Detail	486	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;