Rpl5-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl5-ps1
• Name
  ribosomal protein L5, pseudogene 1
• Synonyms
  Gm7625

• Feature Type
  pseudogene
• IDs
  MGI:3647110
  NCBI Gene: 665407
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:14935296-14936189 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 4.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647110	pseudogene	Chr1:14935242-14936243 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013573	pseudogene	Chr6:84612250-84613147 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0011633	pseudogene	Chr5:65006768-65007652 (+)
CAST/EiJ	MGP_CASTEiJ_G0013077	pseudogene	Chr6:83770658-83771552 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013509	pseudogene	Chr6:84626436-84627333 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013444	pseudogene	Chr6:94649560-94650377 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0012884	pseudogene	Chr6:79621329-79622331 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010806	pseudogene	Chr18:70312479-70313358 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rpl5-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000082193 (Evidence)
• NCBI Gene
  665407

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082193	Ensembl Gene Model | MGI Sequence Detail	894	C57BL/6J
transcript	ENSMUST00000121367	Ensembl | MGI Sequence Detail	894	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rpl5-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr5975	Chr1:14935222-14935232 (+)	-69 bp