Gm5612 Pseudogene Detail

Summary

• Symbol
  Gm5612
• Name
  predicted gene 5612

• Feature Type
  pseudogene
• IDs
  MGI:3647118
  NCBI Gene: 434375
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:18338839-18339213 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 7.04 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647118	pseudogene	Chr9:18338757-18340323 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0034374	protein coding gene	Chr9:15455977-15458279 (+)
A/J	MGP_AJ_G0034353	protein coding gene	Chr9:15324466-15326948 (+)
AKR/J	MGP_AKRJ_G0034281	protein coding gene	Chr9:15464932-15469054 (+)
BALB/cJ	MGP_BALBcJ_G0021176	protein coding gene	Chr14:40656808-40657254 (-)
C3H/HeJ	MGP_C3HHeJ_G0034058	protein coding gene	Chr9:15756942-15758464 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0034868	protein coding gene	Chr9:16037715-16039169 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021544	protein coding gene	Chr17:33032362-33032798 (-)
CAST/EiJ	MGP_CASTEiJ_G0033384	protein coding gene	Chr9:15592814-15594346 (+)
CBA/J	MGP_CBAJ_G0034031	protein coding gene	Chr9:16716617-16718109 (+)
DBA/2J	MGP_DBA2J_G0034188	protein coding gene	Chr9:15178849-15180441 (+)
FVB/NJ	MGP_FVBNJ_G0034132	protein coding gene	Chr9:14737045-14738527 (+)
LP/J	MGP_LPJ_G0034274	protein coding gene	Chr9:15674123-15676685 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034177	protein coding gene	Chr9:17864834-17866666 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0034887	protein coding gene	Chr9:15460344-15462496 (+)
PWK/PhJ	MGP_PWKPhJ_G0017058	protein coding gene	Chr11:449718-454143 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0016854	protein coding gene	Chr11:539984-540628 (-)
WSB/EiJ	MGP_WSBEiJ_G0033501	protein coding gene	Chr9:15253880-15256512 (+)

Homology

• Gene Tree
  Gm5612
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000074501 (Evidence)
• NCBI Gene
  434375

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074501	Ensembl Gene Model | MGI Sequence Detail	375	C57BL/6J
transcript	ENSMUST00000053326	Ensembl | MGI Sequence Detail	375	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;