Gm5611 Pseudogene Detail

Summary

• Symbol
  Gm5611
• Name
  predicted gene 5611

• Feature Type
  pseudogene
• IDs
  MGI:3647121
  NCBI Gene: 434373
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:16941341-16942192 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 5.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647121	pseudogene	Chr9:16941262-16942492 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0029879	protein coding gene	Chr5:112540651-112541487 (-)
A/J	MGP_AJ_G0034349	protein coding gene	Chr9:13970817-13971839 (+)
AKR/J	MGP_AKRJ_G0034277	protein coding gene	Chr9:14035822-14036703 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0034054	protein coding gene	Chr9:14301737-14302439 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0023419	protein coding gene	Chr18:29157938-29158834 (-)
CBA/J	MGP_CBAJ_G0034027	protein coding gene	Chr9:15136279-15136805 (+)
DBA/2J	MGP_DBA2J_G0034184	protein coding gene	Chr9:13799662-13800564 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0034270	protein coding gene	Chr9:14210840-14211592 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0034173	protein coding gene	Chr9:16166069-16192773 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017585	protein coding gene	Chr10:37187561-37188418 (+)
PWK/PhJ	MGP_PWKPhJ_G0033087	protein coding gene	Chr9:13903676-13904251 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0032922	protein coding gene	Chr9:14152726-14153487 (+)
WSB/EiJ	MGP_WSBEiJ_G0033497	protein coding gene	Chr9:13862486-13865016 (+)

Homology

• Gene Tree
  Gm5611
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000090602 (Evidence)
• NCBI Gene
  434373

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000090602	Ensembl Gene Model | MGI Sequence Detail	852	C57BL/6J
transcript	ENSMUST00000164523	Ensembl | MGI Sequence Detail	852	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;