About   Help   FAQ
Gm9801 Gene Detail
Summary
  • Symbol
    Gm9801
  • Name
    predicted gene 9801
  • Synonyms
    EG330552
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3647139
    NCBI Gene: 330552
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:61744254-61859227 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 34.33 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    4950 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647139
 lncRNA gene Chr7:61744254-61859227 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036463
 pseudogene Chr7:63194670-63199016 (-)
A/J MGP_AJ_G0036449
 pseudogene Chr7:61995634-62000191 (-)
AKR/J MGP_AKRJ_G0036399
 pseudogene Chr7:63305410-63309614 (-)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0036132
 pseudogene Chr7:63897459-63901805 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036952
 pseudogene Chr7:65927298-65932738 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0036104
 pseudogene Chr7:68063054-68067747 (-)
DBA/2J MGP_DBA2J_G0036280
 pseudogene Chr7:60829255-60833605 (-)
FVB/NJ MGP_FVBNJ_G0036235
 pseudogene Chr7:60862355-60866701 (-)
LP/J MGP_LPJ_G0036331
 pseudogene Chr7:64392179-64396585 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0036236
 pseudogene Chr7:68260828-68268284 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0037064
 pseudogene Chr7:62570306-62574643 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0035520
 pseudogene Chr7:62940591-62944906 (-)



Homology
less
Human Diseases
less
  • References
    4 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    33 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    1
  • Transgenic
    1
  • Genomic Mutations
    4 involving Gm9801
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    1
  • cDNA Data
    4
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    19
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000045813 Ensembl Gene Model | MGI Sequence Detail 114974 C57BL/6J ±  kb
transcript ENSMUST00000208965 Ensembl | MGI Sequence Detail 3003 Not Applicable  
polypeptide Q8C374 UniProt | EBI | MGI Sequence Detail 137 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 1
References
more
  • Summaries
    All 44
    Developmental Gene Expression 1
    Diseases 4
    Phenotypes 33
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:335224 Nakai N, et al., Virtual reality-based real-time imaging reveals abnormal cortical dynamics during behavioral transitions in a mouse model of autism. Cell Rep. 2023 Mar 24;:112258
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
08/02/2024
MGI 6.24 		The Jackson Laboratory