Gm7285 Pseudogene Detail

Summary

• Symbol
  Gm7285
• Name
  predicted gene 7285

• Feature Type
  pseudogene
• IDs
  MGI:3647212
  NCBI Gene: 640050
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:137599855-137600434 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 76.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647212	pseudogene	Chr5:137599490-137600470 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013282	pseudogene	Chr5:142376271-142378279 (+)
A/J	MGP_AJ_G0013262	pseudogene	Chr5:136165684-136166201 (+)
AKR/J	MGP_AKRJ_G0014080	pseudogene	Chr9:38417371-38417910 (+)
BALB/cJ	MGP_BALBcJ_G0013243	pseudogene	Chr5:137534735-137535222 (+)
C3H/HeJ	MGP_C3HHeJ_G0013092	pseudogene	Chr5:141244267-141244804 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013610	pseudogene	Chr5:147631465-147632009 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012387	pseudogene	Chr9:37355780-37356319 (+)
CAST/EiJ	MGP_CASTEiJ_G0013596	pseudogene	Chr9:38659859-38660397 (+)
CBA/J	MGP_CBAJ_G0013060	pseudogene	Chr5:153510651-153511142 (+)
DBA/2J	MGP_DBA2J_G0013143	pseudogene	Chr5:136066959-136067445 (+)
FVB/NJ	MGP_FVBNJ_G0013142	pseudogene	Chr5:135275688-135276215 (+)
LP/J	MGP_LPJ_G0013212	pseudogene	Chr5:142847696-142849067 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013160	pseudogene	Chr5:156327432-156327941 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014523	pseudogene	Chr9:38342993-38343532 (+)
PWK/PhJ	MGP_PWKPhJ_G0013412	pseudogene	Chr9:37462204-37462743 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013197	pseudogene	Chr9:38584980-38585518 (+)
WSB/EiJ	MGP_WSBEiJ_G0013655	pseudogene	Chr9:38358713-38359252 (+)

Homology

• Gene Tree
  Gm7285
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000105408 (Evidence)
• NCBI Gene
  640050

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105408	Ensembl Gene Model | MGI Sequence Detail	580	C57BL/6J
transcript	ENSMUST00000198801	Ensembl | MGI Sequence Detail	580	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm7285:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49347	Chr5:137599455-137599512 (+)	-371 bp
Tssr49348	Chr5:137599615-137599625 (+)	-235 bp
Tssr49349	Chr5:137599821-137599822 (+)	-33 bp