Gm5279 Pseudogene Detail

Summary

• Symbol
  Gm5279
• Name
  predicted gene 5279

• Feature Type
  pseudogene
• IDs
  MGI:3647225
  NCBI Gene: 383901
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:107250280-107250990 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.83 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647225	pseudogene	Chr3:107250271-107251015 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012338	pseudogene	Chr3:108825066-108825810 (+)
A/J	MGP_AJ_G0012333	pseudogene	Chr3:105380942-105381686 (+)
AKR/J	MGP_AKRJ_G0012299	pseudogene	Chr3:107956483-107957227 (+)
BALB/cJ	MGP_BALBcJ_G0012316	pseudogene	Chr3:105077627-105078371 (+)
C3H/HeJ	MGP_C3HHeJ_G0012180	pseudogene	Chr3:108294853-108295597 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012628	pseudogene	Chr3:112903357-112904101 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011446	pseudogene	Chr4:123248304-123249053 (-)
CAST/EiJ	MGP_CASTEiJ_G0011949	pseudogene	Chr3:107674272-107675013 (+)
CBA/J	MGP_CBAJ_G0012159	pseudogene	Chr3:116723726-116724470 (+)
DBA/2J	MGP_DBA2J_G0012215	pseudogene	Chr3:104581381-104582125 (+)
FVB/NJ	MGP_FVBNJ_G0012219	pseudogene	Chr3:102462209-102462953 (+)
LP/J	MGP_LPJ_G0012285	pseudogene	Chr3:110242336-110243080 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012221	pseudogene	Chr3:122850742-122851486 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012633	pseudogene	Chr3:107548713-107549459 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0011607	pseudogene	Chr3:105678711-105679446 (+)
WSB/EiJ	MGP_WSBEiJ_G0011980	pseudogene	Chr3:108073945-108074689 (+)

Homology

• Gene Tree
  Gm5279
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5279
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000105532 (Evidence)
• NCBI Gene
  383901

Representative Sequences			Length	Strain/Species
genomic	383901	NCBI Gene Model | MGI Sequence Detail	711	C57BL/6J

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm5279:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31206	Chr3:107250206-107250211 (+)	-71 bp