Rps15-ps2 Pseudogene Detail

Summary

• Symbol
  Rps15-ps2
• Name
  ribosomal protein S15, pseudogene 2
• Synonyms
  Gm7121

• Feature Type
  pseudogene
• IDs
  MGI:3647234
  NCBI Gene: 633683
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:57994462-57994742 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 27.82 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647234	pseudogene	Chr6:57994462-57994928 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013817	pseudogene	Chr6:58862526-58862963 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012990	pseudogene	Chr6:56570796-56571233 (+)
CBA/J	MGP_CBAJ_G0013249	pseudogene	Chr6:61305349-61305786 (+)
DBA/2J	MGP_DBA2J_G0013333	pseudogene	Chr6:54779312-54779749 (+)
FVB/NJ	MGP_FVBNJ_G0013330	pseudogene	Chr6:54364414-54364851 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013350	pseudogene	Chr6:63801329-63801766 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013814	pseudogene	Chr6:56713507-56713944 (+)
PWK/PhJ	MGP_PWKPhJ_G0012798	pseudogene	Chr6:54482843-54483447 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012577	pseudogene	Chr6:55952863-55953299 (+)
WSB/EiJ	MGP_WSBEiJ_G0013033	pseudogene	Chr6:56852006-56852443 (+)

Homology

• Gene Tree
  Rps15-ps2
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000071419 (Evidence)
• NCBI Gene
  633683

Representative Sequences			Length	Strain/Species
genomic	633683	NCBI Gene Model | MGI Sequence Detail	281	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Rps15-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56738	Chr6:57994466-57994468 (+)	5 bp