Gm6652 Pseudogene Detail

Summary

• Symbol
  Gm6652
• Name
  predicted gene 6652

• Feature Type
  pseudogene
• IDs
  MGI:3647244
  NCBI Gene: 626096
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:153495350-153496419 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 65.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647244	pseudogene	Chr1:153495215-153496473 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010396	pseudogene	Chr1:158460186-158461086 (-)
A/J	MGP_AJ_G0010386	pseudogene	Chr1:152067803-152068872 (-)
AKR/J	MGP_AKRJ_G0010355	pseudogene	Chr1:156781962-156782991 (-)
BALB/cJ	MGP_BALBcJ_G0010362	pseudogene	Chr1:152619122-152620754 (-)
C3H/HeJ	MGP_C3HHeJ_G0010294	pseudogene	Chr1:156875911-156877009 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010634	pseudogene	Chr1:163934920-163938404 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012165	pseudogene	Chr7:49117473-49118536 (-)
CAST/EiJ	MGP_CASTEiJ_G0013254	pseudogene	Chr6:144954606-144955670 (+)
CBA/J	MGP_CBAJ_G0010263	pseudogene	Chr1:169692795-169693901 (-)
DBA/2J	MGP_DBA2J_G0013626	pseudogene	Chr6:139928086-139929150 (+)
FVB/NJ	MGP_FVBNJ_G0013622	pseudogene	Chr6:138708656-138709720 (+)
LP/J	MGP_LPJ_G0013707	pseudogene	Chr6:147042044-147043108 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013638	pseudogene	Chr6:160565694-160566758 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010598	pseudogene	Chr1:156553337-156554406 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012843	pseudogene	Chr6:143361286-143362344 (+)
WSB/EiJ	MGP_WSBEiJ_G0013314	pseudogene	Chr6:145790296-145791360 (+)

Homology

• Gene Tree
  Gm6652
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm6652
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000099858 (Evidence)
• NCBI Gene
  626096

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099858	Ensembl Gene Model | MGI Sequence Detail	1070	C57BL/6J
transcript	ENSMUST00000186414	Ensembl | MGI Sequence Detail	1070	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6652:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14281	Chr1:153496473-153496482 (-)	-59 bp