Btf3-ps3 Pseudogene Detail

Summary

• Symbol
  Btf3-ps3
• Name
  basic transcription factor 3, pseudogene 3
• Synonyms
  Gm7973

• Feature Type
  pseudogene
• IDs
  MGI:3647336
  NCBI Gene: 666196
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:135240930-135241417 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 57.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647336	pseudogene	ChrX:135240865-135241675 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014149	pseudogene	Chr9:59142038-59142529 (-)
A/J	MGP_AJ_G0014833	pseudogene	ChrX:133115568-133116112 (+)
AKR/J	MGP_AKRJ_G0014770	pseudogene	ChrX:137391564-137392007 (+)
BALB/cJ	MGP_BALBcJ_G0014785	pseudogene	ChrX:131493494-131493981 (+)
C3H/HeJ	MGP_C3HHeJ_G0013947	pseudogene	Chr9:59051131-59051622 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015273	pseudogene	ChrX:137563453-137563940 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009902	pseudogene	Chr13:90638794-90639282 (+)
CAST/EiJ	MGP_CASTEiJ_G0013607	pseudogene	Chr9:59147461-59147947 (-)
CBA/J	MGP_CBAJ_G0013930	pseudogene	Chr9:62909210-62909701 (-)
DBA/2J	MGP_DBA2J_G0014013	pseudogene	Chr9:57052195-57052686 (-)
FVB/NJ	MGP_FVBNJ_G0014676	pseudogene	ChrX:131633947-131634434 (+)
LP/J	MGP_LPJ_G0014096	pseudogene	Chr9:59433250-59433741 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014042	pseudogene	Chr9:64345765-64346256 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015252	pseudogene	ChrX:133065597-133067144 (+)
PWK/PhJ	MGP_PWKPhJ_G0013423	pseudogene	Chr9:57116705-57117286 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013209	pseudogene	Chr9:58841274-58841760 (-)
WSB/EiJ	MGP_WSBEiJ_G0013665	pseudogene	Chr9:58519503-58519994 (-)

Homology

• Gene Tree
  Btf3-ps3
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084216 (Evidence)
• NCBI Gene
  666196

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084216	Ensembl Gene Model | MGI Sequence Detail	488	C57BL/6J
transcript	ENSMUST00000122107	Ensembl | MGI Sequence Detail	488	Not Applicable

Other
Accession IDs

MGI:6450941

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Btf3-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162044	ChrX:135240802-135240822 (+)	-118 bp