Gm5408 Pseudogene Detail

Summary

• Symbol
  Gm5408
• Name
  predicted pseudogene 5408

• Feature Type
  pseudogene
• IDs
  MGI:3647344
  NCBI Gene: 386506
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53012326-53013072 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647344	pseudogene	Chr14:53012324-53013238 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011110	pseudogene	Chr14:46814616-47382152 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0011069	pseudogene	Chr14:48056038-48056773 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0011372	pseudogene	Chr14:49714635-49715381 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010957	pseudogene	Chr14:51184262-51184997 (+)
DBA/2J	MGP_DBA2J_G0011003	pseudogene	Chr14:45359496-45360231 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0011089	pseudogene	Chr14:48255164-48256306 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5408
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5408
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000105920 (Evidence)
• NCBI Gene
  386506

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105920	Ensembl Gene Model | MGI Sequence Detail	747	C57BL/6J
transcript	ENSMUST00000197998	Ensembl | MGI Sequence Detail	747	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;