Gm8546 Pseudogene Detail

Summary

• Symbol
  Gm8546
• Name
  predicted gene 8546

• Feature Type
  pseudogene
• IDs
  MGI:3647346
  NCBI Gene: 100534278
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:89725275-89726538 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647346	pseudogene	Chr13:89725078-89726582 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036399	pseudogene	Chr13:90747898-90751181 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0036334	pseudogene	Chr13:90047612-90048733 (-)
BALB/cJ	MGP_BALBcJ_G0036376	pseudogene	Chr13:88048252-88049509 (-)
C3H/HeJ	MGP_C3HHeJ_G0036070	pseudogene	Chr13:89790792-89792160 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0036042	pseudogene	Chr13:97251620-97253948 (-)
DBA/2J	MGP_DBA2J_G0036215	pseudogene	Chr13:87152334-87153721 (-)
FVB/NJ	MGP_FVBNJ_G0036169	pseudogene	Chr13:86002752-86004009 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0036172	pseudogene	Chr13:97599016-97600273 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036994	pseudogene	Chr13:89455969-89457286 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0035457	pseudogene	Chr13:89937751-89938899 (-)

Homology

• Gene Tree
  Gm8546
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm8546
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  2

• Ensembl
  ENSMUSG00000094463 (Evidence)
• NCBI Gene
  100534278

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094463	Ensembl Gene Model | MGI Sequence Detail	1264	C57BL/6J
transcript	ENSMUST00000178288	Ensembl | MGI Sequence Detail	1264	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69

TSS for Gm8546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr123377	Chr13:89726560-89726582 (-)	-33 bp