Gm6345 Pseudogene Detail

Summary

• Symbol
  Gm6345
• Name
  predicted gene 6345

• Feature Type
  pseudogene
• IDs
  MGI:3647370
  NCBI Gene: 622708
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:170082946-170083149 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 76.84 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647370	pseudogene	Chr1:170081618-170083308 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0039785	pseudogene	Chr1:168773683-168775381 (-)
AKR/J	MGP_AKRJ_G0039713	pseudogene	Chr1:173838302-173839990 (-)
BALB/cJ	MGP_BALBcJ_G0039759	pseudogene	Chr1:169259712-169261400 (-)
C3H/HeJ	MGP_C3HHeJ_G0039416	pseudogene	Chr1:174086801-174088498 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040321	pseudogene	Chr1:181776393-181778083 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036944	pseudogene	Chr1:160470679-160470872 (-)
CAST/EiJ	MGP_CASTEiJ_G0038532	pseudogene	Chr1:173679012-173679205 (-)
CBA/J	MGP_CBAJ_G0039387	pseudogene	Chr1:188240543-188242231 (-)
DBA/2J	MGP_DBA2J_G0039585	pseudogene	Chr1:167635128-167636816 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0039544	pseudogene	Chr1:195576606-195582707 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040427	pseudogene	Chr1:173689446-173689649 (-)
PWK/PhJ	MGP_PWKPhJ_G0038210	pseudogene	Chr1:166827116-166827309 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037954	pseudogene	Chr1:172442490-172442683 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6345
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm6345
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000096964 (Evidence)
• NCBI Gene
  622708

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096964	Ensembl Gene Model | MGI Sequence Detail	204	C57BL/6J
transcript	ENSMUST00000180900	Ensembl | MGI Sequence Detail	204	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6345:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14916	Chr1:170083290-170083330 (-)	-161 bp