Gm4750 Pseudogene Detail

Summary

• Symbol
  Gm4750
• Name
  predicted gene 4750

• Feature Type
  pseudogene
• IDs
  MGI:3647391
  NCBI Gene: 207318
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:151215758-151216899 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647391	pseudogene	ChrX:151215473-151217669 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039674	pseudogene	Chr16:36371971-36373112 (+)
A/J	MGP_AJ_G0039776	pseudogene	ChrX:149468683-149470882 (-)
AKR/J	MGP_AKRJ_G0039703	pseudogene	ChrX:154232457-154234655 (+)
BALB/cJ	MGP_BALBcJ_G0039748	pseudogene	ChrX:147621210-147623409 (-)
C3H/HeJ	MGP_C3HHeJ_G0039405	pseudogene	ChrX:150414012-150416211 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040307	pseudogene	ChrX:154469734-154471933 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038523	pseudogene	ChrX:129827424-129829623 (+)
CBA/J	MGP_CBAJ_G0039378	pseudogene	ChrX:159030590-159031731 (+)
DBA/2J	MGP_DBA2J_G0039574	pseudogene	ChrX:148496715-148497856 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0039613	pseudogene	ChrX:151309095-151311294 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0038107	pseudogene	Chr17:5360669-5361814 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038756	pseudogene	ChrX:147785014-147787045 (+)

Homology

• Gene Tree
  Gm4750
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000087235 (Evidence)
• NCBI Gene
  207318

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087235	Ensembl Gene Model | MGI Sequence Detail	1142	C57BL/6J
transcript	ENSMUST00000151942	Ensembl | MGI Sequence Detail	1142	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4750:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162392	ChrX:151215676-151215698 (+)	-71 bp
Tssr162393	ChrX:151216051-151216082 (+)	309 bp