Gm5388 Pseudogene Detail

Summary

• Symbol
  Gm5388
• Name
  predicted gene 5388

• Feature Type
  pseudogene
• IDs
  MGI:3647395
  NCBI Gene: 385356
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:50307754-50308870 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 28.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647395	pseudogene	ChrX:50307628-50308948 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0014426	pseudogene	ChrX:46256758-46257874 (-)
AKR/J	MGP_AKRJ_G0014353	pseudogene	ChrX:47529528-47530644 (-)
BALB/cJ	MGP_BALBcJ_G0014380	pseudogene	ChrX:45854289-45855405 (-)
C3H/HeJ	MGP_C3HHeJ_G0014213	pseudogene	ChrX:46653358-46654474 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014837	pseudogene	ChrX:47492026-47493142 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012623	pseudogene	ChrX:43810759-43811889 (-)
CAST/EiJ	MGP_CASTEiJ_G0013854	pseudogene	ChrX:34114882-34115998 (-)
CBA/J	MGP_CBAJ_G0014196	pseudogene	ChrX:48824432-48827539 (-)
DBA/2J	MGP_DBA2J_G0014277	pseudogene	ChrX:46080153-46081269 (-)
FVB/NJ	MGP_FVBNJ_G0014275	pseudogene	ChrX:45787542-45788658 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0014309	pseudogene	ChrX:50359393-50360509 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014816	pseudogene	ChrX:46287681-46288797 (-)
PWK/PhJ	MGP_PWKPhJ_G0013666	pseudogene	ChrX:33616248-33617468 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013461	pseudogene	ChrX:34900100-34901226 (-)
WSB/EiJ	MGP_WSBEiJ_G0013919	pseudogene	ChrX:45835932-45837048 (-)

Homology

• Gene Tree
  Gm5388
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000081350 (Evidence)
• NCBI Gene
  385356

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081350	Ensembl Gene Model | MGI Sequence Detail	1117	C57BL/6J
transcript	ENSMUST00000120059	Ensembl | MGI Sequence Detail	1117	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5388:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163340	ChrX:50308944-50308951 (-)	-78 bp