Gm7993 Pseudogene Detail

Summary

• Symbol
  Gm7993
• Name
  predicted gene 7993

• Feature Type
  pseudogene
• IDs
  MGI:3647399
  NCBI Gene: 666231
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:96122099-96123482 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 47.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  115 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647399	pseudogene	Chr5:96121901-96123682 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0011581	pseudogene	Chr17:14040920-14042313 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0011206	pseudogene	Chr17:12887291-12890691 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013927	pseudogene	Chr7:110543792-110545244 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011122	pseudogene	Chr12:297933-299301 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm7993
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm7993
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  2

• Ensembl
  ENSMUSG00000107092 (Evidence)
• NCBI Gene
  666231

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107092	Ensembl Gene Model | MGI Sequence Detail	1384	C57BL/6J
transcript	ENSMUST00000200970	Ensembl | MGI Sequence Detail	1384	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm7993:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47391	Chr5:96121779-96121783 (+)	-318 bp