Gm5224 Pseudogene Detail

Summary

• Symbol
  Gm5224
• Name
  predicted pseudogene 5224

• Feature Type
  pseudogene
• IDs
  MGI:3647439
  NCBI Gene: 383218
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:22953936-22954353 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 11.40 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  125 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647439	pseudogene	Chr17:22953809-22956079 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011332	pseudogene	Chr17:21598055-21598472 (+)
A/J	MGP_AJ_G0011316	pseudogene	Chr17:20930635-20931052 (+)
AKR/J	MGP_AKRJ_G0011278	pseudogene	Chr17:20945274-20945691 (+)
BALB/cJ	MGP_BALBcJ_G0011291	pseudogene	Chr17:21102978-21103395 (+)
C3H/HeJ	MGP_C3HHeJ_G0011179	pseudogene	Chr17:21353810-21354227 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011585	pseudogene	Chr17:22418728-22419145 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010969	pseudogene	Chr3:89706100-89709861 (+)
CAST/EiJ	MGP_CASTEiJ_G0011005	pseudogene	Chr17:21191574-21200882 (+)
CBA/J	MGP_CBAJ_G0011160	pseudogene	Chr17:23195944-23196361 (+)
DBA/2J	MGP_DBA2J_G0011212	pseudogene	Chr17:20546009-20546426 (+)
FVB/NJ	MGP_FVBNJ_G0011212	pseudogene	Chr17:20291612-20292029 (+)
LP/J	MGP_LPJ_G0011301	pseudogene	Chr17:21842743-21843160 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011208	pseudogene	Chr17:23021271-23021688 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011562	pseudogene	Chr17:21307864-21308281 (+)
PWK/PhJ	MGP_PWKPhJ_G0010875	pseudogene	Chr17:19363785-19364202 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010702	pseudogene	Chr17:19539659-19540075 (+)
WSB/EiJ	MGP_WSBEiJ_G0011045	pseudogene	Chr17:21356524-21356941 (+)

Homology

• Gene Tree
  Gm5224
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm5224
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098210 (Evidence)
• NCBI Gene
  383218

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098210	Ensembl Gene Model | MGI Sequence Detail	418	C57BL/6J
transcript	ENSMUST00000183060	Ensembl | MGI Sequence Detail	350	Not Applicable

References

• Summaries
  All 20

  Phenotypes 16
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964

TSS for Gm5224:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142919	Chr17:22953799-22953831 (+)	-121 bp