Gm9423 Pseudogene Detail

Summary

• Symbol
  Gm9423
• Name
  predicted gene 9423

• Feature Type
  pseudogene
• IDs
  MGI:3647501
  NCBI Gene: 668905
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:158666083-158667079 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 82.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  137 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647501	pseudogene	Chr3:158666065-158667283 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012485	pseudogene	Chr3:163145697-163146693 (+)
A/J	MGP_AJ_G0012480	pseudogene	Chr3:157207729-157208725 (+)
AKR/J	MGP_AKRJ_G0012444	pseudogene	Chr3:161370328-161371324 (+)
BALB/cJ	MGP_BALBcJ_G0012462	pseudogene	Chr3:157009342-157010338 (+)
C3H/HeJ	MGP_C3HHeJ_G0012325	pseudogene	Chr3:161773062-161774058 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012776	pseudogene	Chr3:168465910-168466906 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011130	pseudogene	Chr3:151725605-151726574 (+)
CAST/EiJ	MGP_CASTEiJ_G0012091	pseudogene	Chr3:161920509-161921505 (+)
CBA/J	MGP_CBAJ_G0012305	pseudogene	Chr3:174441599-174442595 (+)
DBA/2J	MGP_DBA2J_G0012358	pseudogene	Chr3:156237695-156238691 (+)
FVB/NJ	MGP_FVBNJ_G0012360	pseudogene	Chr3:153587208-153588204 (+)
LP/J	MGP_LPJ_G0012432	pseudogene	Chr3:164468404-164469400 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012367	pseudogene	Chr3:183140068-183141064 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012780	pseudogene	Chr3:161026474-161027470 (+)
PWK/PhJ	MGP_PWKPhJ_G0011927	pseudogene	Chr3:156153915-156154911 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011747	pseudogene	Chr3:159285128-159286123 (+)
WSB/EiJ	MGP_WSBEiJ_G0012117	pseudogene	Chr3:161991482-161992478 (+)

Homology

• Gene Tree
  Gm9423
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000097966 (Evidence)
• NCBI Gene
  668905

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097966	Ensembl Gene Model | MGI Sequence Detail	997	C57BL/6J
transcript	ENSMUST00000183173	Ensembl | MGI Sequence Detail	997	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9423:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32513	Chr3:158666012-158666014 (+)	-70 bp