Gm4968 Pseudogene Detail

Summary

• Symbol
  Gm4968
• Name
  predicted gene 4968

• Feature Type
  pseudogene
• IDs
  MGI:3647516
  NCBI Gene: 243642
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:127210725-127211582 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 62.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647516	pseudogene	Chr6:127210691-127211622 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013708	pseudogene	Chr6:130723068-130724006 (+)
A/J	MGP_AJ_G0013694	pseudogene	Chr6:125757177-125758547 (+)
AKR/J	MGP_AKRJ_G0013656	pseudogene	Chr6:129155581-129156438 (+)
BALB/cJ	MGP_BALBcJ_G0013673	pseudogene	Chr6:125311851-125312708 (+)
C3H/HeJ	MGP_C3HHeJ_G0013517	pseudogene	Chr6:129277016-129279220 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014059	pseudogene	Chr6:134134311-134135534 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0013568	pseudogene	Chr6:124643041-124643898 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013581	pseudogene	Chr6:143242582-143243392 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014054	pseudogene	Chr6:129114174-129115031 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm4968
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000062365 (Evidence)
• NCBI Gene
  243642

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000062365	Ensembl Gene Model | MGI Sequence Detail	858	C57BL/6J
transcript	ENSMUST00000071458	Ensembl | MGI Sequence Detail	858	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm4968:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59025	Chr6:127210687-127210703 (+)	-30 bp