Gm5342 Pseudogene Detail

Summary

• Symbol
  Gm5342
• Name
  predicted gene 5342

• Feature Type
  pseudogene
• IDs
  MGI:3647517
  NCBI Gene: 384741
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:68859632-68860634 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 38.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647517	pseudogene	Chr7:68859614-68860834 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013927	pseudogene	Chr7:70569651-70570653 (+)
A/J	MGP_AJ_G0013945	pseudogene	Chr7:69077813-69078815 (+)
AKR/J	MGP_AKRJ_G0013879	pseudogene	Chr7:70519709-70520711 (+)
BALB/cJ	MGP_BALBcJ_G0013901	pseudogene	Chr7:68823756-68824758 (+)
C3H/HeJ	MGP_C3HHeJ_G0013736	pseudogene	Chr7:71246494-71247496 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014335	pseudogene	Chr7:73523578-73524580 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012186	pseudogene	Chr7:71899378-71900389 (+)
CAST/EiJ	MGP_CASTEiJ_G0013396	pseudogene	Chr7:61980349-61981350 (+)
CBA/J	MGP_CBAJ_G0013717	pseudogene	Chr7:75852932-75853934 (+)
DBA/2J	MGP_DBA2J_G0013796	pseudogene	Chr7:67772915-67773913 (+)
FVB/NJ	MGP_FVBNJ_G0013796	pseudogene	Chr7:67891510-67892508 (+)
LP/J	MGP_LPJ_G0013871	pseudogene	Chr7:71769332-71770330 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013822	pseudogene	Chr7:76061261-76062263 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014295	pseudogene	Chr7:69928376-69929374 (+)
PWK/PhJ	MGP_PWKPhJ_G0013210	pseudogene	Chr7:60846556-60847558 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012976	pseudogene	Chr7:56955272-56956223 (+)
WSB/EiJ	MGP_WSBEiJ_G0013459	pseudogene	Chr7:70266367-70267369 (+)

Homology

• Gene Tree
  Gm5342
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5342
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098017 (Evidence)
• NCBI Gene
  384741

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000098017	Ensembl Gene Model | MGI Sequence Detail	1003	C57BL/6J
transcript	ENSMUST00000181982	Ensembl | MGI Sequence Detail	1003	Not Applicable

References

• Summaries
  All 13

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67