Gm6568 Pseudogene Detail

Summary

• Symbol
  Gm6568
• Name
  predicted pseudogene 6568

• Feature Type
  pseudogene
• IDs
  MGI:3647518
  NCBI Gene: 625253
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:156323862-156324558 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 72.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647518	pseudogene	ChrX:156323800-156324746 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014958	pseudogene	ChrX:155434327-155435023 (+)
A/J	MGP_AJ_G0014949	pseudogene	ChrX:154755462-154756600 (+)
AKR/J	MGP_AKRJ_G0014890	pseudogene	ChrX:159618698-159619394 (+)
BALB/cJ	MGP_BALBcJ_G0014903	pseudogene	ChrX:152809325-152810021 (+)
C3H/HeJ	MGP_C3HHeJ_G0014741	pseudogene	ChrX:155794676-155795372 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015389	pseudogene	ChrX:160017845-160019586 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009762	pseudogene	Chr12:40270000-40271337 (-)
CAST/EiJ	MGP_CASTEiJ_G0014348	pseudogene	ChrX:134884046-134884742 (+)
CBA/J	MGP_CBAJ_G0014727	pseudogene	ChrX:164598451-164600220 (+)
DBA/2J	MGP_DBA2J_G0014810	pseudogene	ChrX:153725370-153726066 (+)
FVB/NJ	MGP_FVBNJ_G0014793	pseudogene	ChrX:152814455-152815151 (+)
LP/J	MGP_LPJ_G0014911	pseudogene	ChrX:156597427-156598123 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014837	pseudogene	ChrX:173163155-173163851 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015374	pseudogene	ChrX:154986617-154987313 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0013930	pseudogene	ChrX:135358741-135359407 (+)
WSB/EiJ	MGP_WSBEiJ_G0014427	pseudogene	ChrX:152978933-152979629 (+)

Homology

• Gene Tree
  Gm6568
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082002 (Evidence)
• NCBI Gene
  625253

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082002	Ensembl Gene Model | MGI Sequence Detail	697	C57BL/6J
transcript	ENSMUST00000122274	Ensembl | MGI Sequence Detail	697	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6568:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162431	ChrX:156323676-156323681 (+)	-183 bp