Gm8618 Pseudogene Detail

Summary

• Symbol
  Gm8618
• Name
  predicted gene 8618

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3647540
  NCBI Gene: 667414
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:134037106-134037537 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 58.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647540	pseudogene	Chr1:134037084-134037588 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010349	pseudogene	Chr1:137755752-137756183 (+)
A/J	MGP_AJ_G0010338	pseudogene	Chr1:132574759-132575535 (+)
AKR/J	MGP_AKRJ_G0010308	pseudogene	Chr1:136531981-136532412 (+)
BALB/cJ	MGP_BALBcJ_G0010314	pseudogene	Chr1:132907078-132908020 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010587	pseudogene	Chr1:142781543-142781974 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010217	pseudogene	Chr1:147694149-147698163 (+)
DBA/2J	MGP_DBA2J_G0010252	pseudogene	Chr1:131585548-131585979 (+)
FVB/NJ	MGP_FVBNJ_G0010275	pseudogene	Chr1:130213939-130214370 (+)
LP/J	MGP_LPJ_G0010335	pseudogene	Chr1:139026195-139028125 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010231	pseudogene	Chr1:153420428-153423137 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010550	pseudogene	Chr1:136250330-136250761 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm8618
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm8618
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  2

• Ensembl
  ENSMUSG00000073559 (Evidence)
• NCBI Gene
  667414

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073559	Ensembl Gene Model | MGI Sequence Detail	432	C57BL/6J
transcript	ENSMUST00000097570	Ensembl | MGI Sequence Detail	432	Not Applicable
polypeptide	XP_036010771	RefSeq | MGI Sequence Detail	143	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for Gm8618:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr8856	Chr1:134037074-134037081 (+)	-28 bp