Gm4986 Pseudogene Detail

Summary

• Symbol
  Gm4986
• Name
  predicted pseudogene 4986

• Feature Type
  pseudogene
• IDs
  MGI:3647545
  NCBI Gene: 245391
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:39225885-39226433 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 23.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  71 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647545	pseudogene	ChrX:39225852-39226467 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014379	pseudogene	ChrX:35147750-35148298 (-)
A/J	MGP_AJ_G0014386	pseudogene	ChrX:35169284-35169832 (-)
AKR/J	MGP_AKRJ_G0014313	pseudogene	ChrX:36065345-36065893 (-)
BALB/cJ	MGP_BALBcJ_G0014338	pseudogene	ChrX:34872997-34873545 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013813	pseudogene	ChrX:23428457-23429005 (-)
CBA/J	MGP_CBAJ_G0014156	pseudogene	ChrX:36880548-36881060 (-)
DBA/2J	MGP_DBA2J_G0014234	pseudogene	ChrX:35003277-35003794 (-)
FVB/NJ	MGP_FVBNJ_G0014235	pseudogene	ChrX:34732136-34732674 (-)
LP/J	MGP_LPJ_G0014331	pseudogene	ChrX:35510369-35510917 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0013423	pseudogene	ChrX:23905597-23906047 (-)
WSB/EiJ	MGP_WSBEiJ_G0013878	pseudogene	ChrX:34816583-34817033 (-)

Homology

• Gene Tree
  Gm4986
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000080996 (Evidence)
• NCBI Gene
  245391

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080996	Ensembl Gene Model | MGI Sequence Detail	549	C57BL/6J
transcript	ENSMUST00000119731	Ensembl | MGI Sequence Detail	549	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm4986:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163235	ChrX:39226461-39226469 (-)	-32 bp