Gm8839 Pseudogene Detail

Summary

• Symbol
  Gm8839
• Name
  predicted gene 8839

• Feature Type
  pseudogene
• IDs
  MGI:3647576
  NCBI Gene: 667841
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:85314318-85315962 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 39.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  192 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647576	pseudogene	ChrX:85314318-85315964 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0014584	pseudogene	ChrX:82465857-82467573 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0014535	pseudogene	ChrX:81267495-81269112 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0015011	pseudogene	ChrX:84864480-84908370 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013995	pseudogene	ChrX:67699433-67701063 (+)
CBA/J	MGP_CBAJ_G0014354	pseudogene	ChrX:87204000-87205644 (+)
DBA/2J	MGP_DBA2J_G0014434	pseudogene	ChrX:81851708-81853385 (+)
FVB/NJ	MGP_FVBNJ_G0014423	pseudogene	ChrX:81271512-81273248 (+)
LP/J	MGP_LPJ_G0014532	pseudogene	ChrX:83228071-83229706 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014467	pseudogene	ChrX:90782285-90784038 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014978	pseudogene	ChrX:82093334-82095085 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm8839
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000083830 (Evidence)
• NCBI Gene
  667841

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083830	Ensembl Gene Model | MGI Sequence Detail	1645	C57BL/6J
transcript	ENSMUST00000121279	Ensembl | MGI Sequence Detail	1645	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;