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Gm5533 Gene Detail
Summary
  • Symbol
    Gm5533
  • Name
    predicted gene 5533
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3647595
    NCBI Gene: 433384
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:181679139-181680754 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 84.92 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    154 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647595
 lncRNA gene Chr1:181679139-181680754 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005055
 lincRNA gene Chr1:188416480-188418095 (-)
A/J MGP_AJ_G0005037
 lincRNA gene Chr1:180770937-180772552 (-)
AKR/J MGP_AKRJ_G0005015
 lincRNA gene Chr1:186145611-186147226 (-)
BALB/cJ MGP_BALBcJ_G0005019
 lincRNA gene Chr1:181406601-181408216 (-)
C3H/HeJ MGP_C3HHeJ_G0004967
 lincRNA gene Chr1:186933740-186935355 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005168
 lincRNA gene Chr1:194524129-194525744 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004576
 lincRNA gene Chr1:171730934-171732573 (-)
CAST/EiJ MGP_CASTEiJ_G0004914
 lincRNA gene Chr1:186293418-186295027 (-)
CBA/J MGP_CBAJ_G0004958
 lincRNA gene Chr1:201730688-201732303 (-)
DBA/2J MGP_DBA2J_G0004977
 lincRNA gene Chr1:179577248-179578863 (-)
FVB/NJ MGP_FVBNJ_G0004998
 lincRNA gene Chr1:177695053-177696668 (-)
LP/J MGP_LPJ_G0005055
 lincRNA gene Chr1:189641855-189643470 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004982
 lincRNA gene Chr1:208801762-208803377 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005174
 lincRNA gene Chr1:185947847-185949468 (-)
PWK/PhJ MGP_PWKPhJ_G0004866
 lincRNA gene Chr1:178735633-178737276 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004791
 lincRNA gene Chr1:184895271-184896895 (-)
WSB/EiJ MGP_WSBEiJ_G0004961
 lincRNA gene Chr1:186136211-186137826 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000056699 Ensembl Gene Model | MGI Sequence Detail 1616 C57BL/6J ±  kb
transcript ENSMUST00000070987 Ensembl | MGI Sequence Detail 1343 Not Applicable  
polypeptide Q8C9X0 UniProt | EBI | MGI Sequence Detail 119 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 1
References
more
  • Summaries
    All 11
    Phenotypes 2
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory