Gm9061 Pseudogene Detail

Summary

• Symbol
  Gm9061
• Name
  predicted gene 9061

• Feature Type
  pseudogene
• IDs
  MGI:3647637
  NCBI Gene: 668242
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:64731636-64732641 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 37.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647637	pseudogene	Chr16:64731618-64732844 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011301	pseudogene	Chr16:64433032-64433950 (+)
A/J	MGP_AJ_G0011285	pseudogene	Chr16:61668781-61670689 (+)
AKR/J	MGP_AKRJ_G0011246	pseudogene	Chr16:63555690-63556992 (+)
BALB/cJ	MGP_BALBcJ_G0011259	pseudogene	Chr16:61876370-61878006 (+)
C3H/HeJ	MGP_C3HHeJ_G0011151	pseudogene	Chr16:63895713-63896609 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011545	pseudogene	Chr16:66359859-66360779 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010126	pseudogene	Chr16:60718623-60719625 (+)
CAST/EiJ	MGP_CASTEiJ_G0010975	pseudogene	Chr16:64143294-64145068 (+)
CBA/J	MGP_CBAJ_G0011129	pseudogene	Chr16:69147972-69148919 (+)
DBA/2J	MGP_DBA2J_G0011178	pseudogene	Chr16:61428340-61429345 (+)
FVB/NJ	MGP_FVBNJ_G0011180	pseudogene	Chr16:61055697-61056774 (+)
LP/J	MGP_LPJ_G0011271	pseudogene	Chr16:64226935-64227847 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011176	pseudogene	Chr16:70375046-70375966 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011529	pseudogene	Chr16:63698605-63699520 (+)
PWK/PhJ	MGP_PWKPhJ_G0010843	pseudogene	Chr16:61592290-61593214 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010670	pseudogene	Chr16:63386536-63387525 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9061
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000097999 (Evidence)
• NCBI Gene
  668242

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097999	Ensembl Gene Model | MGI Sequence Detail	1006	C57BL/6J
transcript	ENSMUST00000182707	Ensembl | MGI Sequence Detail	1006	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9061:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr138895	Chr16:64731559-64731561 (+)	-76 bp