Gm6088 Pseudogene Detail

Summary

• Symbol
  Gm6088
• Name
  predicted gene 6088

• Feature Type
  pseudogene
• IDs
  MGI:3647646
  NCBI Gene: 619612
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:139698145-139700683 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 61.49 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  232 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647646	pseudogene	ChrX:139698030-139701377 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014866	pseudogene	ChrX:138367953-138370491 (+)
A/J	MGP_AJ_G0014859	pseudogene	ChrX:137742399-137744937 (+)
AKR/J	MGP_AKRJ_G0014801	pseudogene	ChrX:142156236-142158774 (+)
BALB/cJ	MGP_BALBcJ_G0014815	pseudogene	ChrX:136048246-136050784 (+)
C3H/HeJ	MGP_C3HHeJ_G0014651	pseudogene	ChrX:138375254-138377792 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015303	pseudogene	ChrX:142396751-142399289 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012946	pseudogene	ChrX:129445022-129447477 (+)
CAST/EiJ	MGP_CASTEiJ_G0014265	pseudogene	ChrX:119186821-119189390 (+)
CBA/J	MGP_CBAJ_G0014640	pseudogene	ChrX:146795367-146797905 (+)
DBA/2J	MGP_DBA2J_G0014723	pseudogene	ChrX:136873248-136875786 (+)
FVB/NJ	MGP_FVBNJ_G0014706	pseudogene	ChrX:136105361-136107899 (+)
LP/J	MGP_LPJ_G0014822	pseudogene	ChrX:139302334-139304872 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014751	pseudogene	ChrX:154319048-154321586 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015284	pseudogene	ChrX:137671572-137674110 (+)
PWK/PhJ	MGP_PWKPhJ_G0014065	pseudogene	ChrX:116083467-116086224 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013855	pseudogene	ChrX:119738123-119740683 (+)
WSB/EiJ	MGP_WSBEiJ_G0014345	pseudogene	ChrX:135988434-135990972 (+)

Homology

• Gene Tree
  Gm6088
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083646 (Evidence)
• NCBI Gene
  619612

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083646	Ensembl Gene Model | MGI Sequence Detail	2539	C57BL/6J
transcript	ENSMUST00000117257	Ensembl | MGI Sequence Detail	2539	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6088:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162211	ChrX:139698051-139698063 (+)	-88 bp