Gm6162 Pseudogene Detail

Summary

• Symbol
  Gm6162
• Name
  predicted gene 6162

• Feature Type
  pseudogene
• IDs
  MGI:3647648
  NCBI Gene: 620570
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:6229955-6232884 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 1.96 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  253 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647648	pseudogene	Chr3:6229754-6232970 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012004	pseudogene	Chr3:2957172-2960101 (-)
A/J	MGP_AJ_G0011995	pseudogene	Chr3:3296334-3299263 (-)
AKR/J	MGP_AKRJ_G0011954	pseudogene	Chr3:3114723-3117652 (-)
BALB/cJ	MGP_BALBcJ_G0011973	pseudogene	Chr3:3013217-3016146 (-)
C3H/HeJ	MGP_C3HHeJ_G0011849	pseudogene	Chr3:3337988-3340917 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012277	pseudogene	Chr3:3451972-3454901 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010722	pseudogene	Chr3:2527291-2530198 (-)
CAST/EiJ	MGP_CASTEiJ_G0011632	pseudogene	Chr3:3392453-3395382 (-)
CBA/J	MGP_CBAJ_G0011823	pseudogene	Chr3:3215739-3218668 (-)
DBA/2J	MGP_DBA2J_G0011878	pseudogene	Chr3:2903646-2906575 (-)
FVB/NJ	MGP_FVBNJ_G0011885	pseudogene	Chr3:2813705-2816634 (-)
LP/J	MGP_LPJ_G0011948	pseudogene	Chr3:3458831-3461760 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011885	pseudogene	Chr3:4092090-4095019 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012277	pseudogene	Chr3:2916471-2919400 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011653	pseudogene	Chr3:2941170-2944099 (-)

Homology

• Gene Tree
  Gm6162
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000103733 (Evidence)
• NCBI Gene
  620570

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103733	Ensembl Gene Model | MGI Sequence Detail	2930	C57BL/6J
transcript	ENSMUST00000194870	Ensembl | MGI Sequence Detail	2930	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6162:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32532	Chr3:6234861-6234866 (-)	-1,980 bp