Gm7616 Gene Detail

Summary

• Symbol
  Gm7616
• Name
  predicted gene 7616

• Feature Type
  lncRNA gene
• IDs
  MGI:3647735
  NCBI Gene: 665389
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:59858579-59859686 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 32.36 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647735	lncRNA gene	Chr9:59858568-59866327 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004636	antisense lncRNA gene	Chr9:59341329-59348976 (+)
A/J	MGP_AJ_G0004617	antisense lncRNA gene	Chr9:57434628-57442349 (+)
AKR/J	MGP_AKRJ_G0004600	antisense lncRNA gene	Chr9:58770013-58778971 (+)
BALB/cJ	MGP_BALBcJ_G0004601	antisense lncRNA gene	Chr9:57152584-57160290 (+)
C3H/HeJ	MGP_C3HHeJ_G0004550	antisense lncRNA gene	Chr9:59242649-59250341 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004751	antisense lncRNA gene	Chr9:60966053-60973493 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004202	antisense lncRNA gene	Chr9:57151215-57158743 (+)
CAST/EiJ	MGP_CASTEiJ_G0004508	antisense lncRNA gene	Chr9:59339731-59346956 (+)
CBA/J	MGP_CBAJ_G0004544	antisense lncRNA gene	Chr9:63124480-63132182 (+)
DBA/2J	MGP_DBA2J_G0004559	antisense lncRNA gene	Chr9:57239527-57247156 (+)
FVB/NJ	MGP_FVBNJ_G0004577	antisense lncRNA gene	Chr9:56508925-56518524 (+)
LP/J	MGP_LPJ_G0004640	antisense lncRNA gene	Chr9:59632118-59641134 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004565	antisense lncRNA gene	Chr9:64579520-64588138 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004750	antisense lncRNA gene	Chr9:58779956-58788592 (+)
PWK/PhJ	MGP_PWKPhJ_G0004461	antisense lncRNA gene	Chr9:57310384-57318125 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004401	antisense lncRNA gene	Chr9:59043813-59051428 (+)
WSB/EiJ	MGP_WSBEiJ_G0004549	antisense lncRNA gene	Chr9:58716108-58724806 (+)

Homology

• Gene Tree
  Gm7616
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084913 (Evidence)
• NCBI Gene
  665389

Representative Sequences			Length	Strain/Species
genomic	665389	NCBI Gene Model | MGI Sequence Detail	1108	C57BL/6J
transcript	NR_168957	RefSeq | MGI Sequence Detail	438	C57BL/6

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm7616:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr85480	Chr9:59858573-59858585 (+)	0 bp