Gm10109 Pseudogene Detail

Summary

• Symbol
  Gm10109
• Name
  predicted gene 10109
• Synonyms
  EG638411

• Feature Type
  pseudogene
• IDs
  MGI:3647742
  NCBI Gene: 638411
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:43870438-43871581 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647742	pseudogene	Chr7:43870438-43873134 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0039855	pseudogene	Chr7:43459943-43461510 (-)
AKR/J	MGP_AKRJ_G0039782	pseudogene	Chr7:44678806-44730507 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0039481	pseudogene	Chr7:44973199-44995186 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040403	pseudogene	Chr7:46609240-46615644 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036990	pseudogene	Chr7:45564975-45574427 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039451	pseudogene	Chr7:47684235-47952911 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0039689	pseudogene	Chr7:44933856-45045443 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039607	pseudogene	Chr7:46812853-46872787 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040500	pseudogene	Chr7:43784314-43982504 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038821	pseudogene	Chr7:44409569-44446078 (-)

Homology

• Gene Tree
  Gm10109
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000062073 (Evidence)
• NCBI Gene
  638411

Representative Sequences			Length	Strain/Species
genomic	638411	NCBI Gene Model | MGI Sequence Detail	1144	C57BL/6J
transcript	AK131849	GenBank | ENA | DDBJ | MGI Sequence Detail	1079	C57BL/6J
polypeptide	Q3V2G8	UniProt | EBI | MGI Sequence Detail	103	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;